Publications

Papers in Peer-Reviewed Journals

	Martin C. Stumpe, Nikolay Blinov, David Wishart, Andriy Kovalenko, and Vijay S. Pande. Calculation of Local Water Densities in Biological Systems - A Comparison of Molecular Dynamics Simulations and the 3D-RISM Molecular Theory of Solvation. J. Phys. Chem. B, 115(2), 319-328 (2011) (Cover article)
	Maik Goette, Martin C. Stumpe, Ralf Ficner, and Helmut Grubmüller. Molecular Determinants of Snurportin 1 Ligand Affinity and Structural Response upon Binding. Biophys. J., 97(2), 581-589 (2009)
	Martin C. Stumpe and Helmut Grubmüller. Urea Impedes the Hydrophobic Collapse of Partially Unfolded Proteins. Biophys. J., 96(9), 3744-3752 (2009)
	Martin C. Stumpe and Helmut Grubmüller. Polar or Apolar - The Role of Polarity for Urea-Induced Protein Denaturation. PLoS Comp. Biol., 4(11), e1000221 (2008)
	Martin C. Stumpe and Helmut Grubmüller. Interaction of Urea with Amino Acids - Implications for Urea-Induced Protein Denaturation. J. Am. Chem. Soc., 129(51), 16126-16131 (2007)
	Martin C. Stumpe and Helmut Grubmüller. Aqueous Urea Solutions: Structure, Energetics, and Urea Aggregation. J. Phys. Chem. B, 111(22), 6220-6228 (2007) (Cover article)
	G. Berger, M. Stumpe, M. Höhne, and C. Denz. Reliability of associative recall based on data manipulations in phase encoded volume holographic storage systems. J. Opt. A: Pure Appl. Opt., 7:567-575 (2005)

Papers in Peer-Reviewed Journals (Kepler)

	Gautier, T. N. et al. Kepler-20: A Sun-like Star with Three Sub-Neptune Exoplanets and Two Earth-Size Candidates. (accepted in Astrophysical Journal, 2012)
	Tenenbaum, P. et al. Detection of Potential Transit Signals in the First Three Quarters of Kepler Mission Data. (accepted in Astrophysical Journal, 2012)
	Mosser, B. et al. Red giant core structure and evolution constrained by gravity-dominated mixed modes observed with Kepler. (accepted in Astronomy & Astrophysics, 2012)
	Appourchaux, T. et al. Oscillation mode frequencies of 61 main-sequence and subgiant stars observed by Kepler. (submitted, 2012)

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Book Chapters

Del Lucent, Martin C. Stumpe, and Vijay Pande. Chaperonins: The machines which fold proteins. Chapter 5 in Molecular Machines, ISBN 978-9814343442, World Scientific, edited by Benoit Roux (2011).

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Theses

	Martin Stumpe. De natura denaturantium - On the molecular basis of urea-induced protein denaturation. Doktorarbeit. Georg-August-Universität Göttingen (2007)
	Martin Stumpe. Inhaltsadressiertes Auslesen in einem volumenholographischen Speichersystem mit Phasencodierung. Diplomarbeit. Westfälische Wilhelms-Universität Münster (2003)

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Talks at Conferences

• "Calculation of local water densities with MD and 3D RISM - A method assessment for large-scale sampling"
  France-Stanford Symposium on selected topics in Biophysics, Stanford, February 2010
• "From Chaperonin Atomic Structure to Folding Activity...via Water Structure"
  Nanomedicine Retreat of Protein Folding Machinery Center, Woodside, September 2009
• "Hindered refolding as mechanism for urea-induced unfolding of the Cold Shock protein"
  Computer simulation and theory of macromolecules, Hünfeld, May 2006
• "Hindered refolding as mechanism for urea-induced unfolding of the Cold Shock protein"
  Gordon-Kenan Research Seminar on Protein Folding Dynamics, Ventura, January 2006
• "Molecular mechanism of urea-induced protein unfolding"
  Bunsentagung 2005, Frankfurt, May 2005
• "Molecular mechanism of urea-induced protein unfolding"
  Frühjahrstagung der DPG, Berlin, March 2005
• "Structural characterization of urea/water solutions"
  Computer simulation and theory of macromolecules, Hünfeld, May 2004
• "Inhaltsadressiertes Auslesen in einem volumenholographischen Speichersystem mit Phasencodierung"
  Frühjahrstagung der DPG, Fachrichtung Quantenoptik, Hannover, March 2003

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Other Conference Contributions

Posters:

• "Wavelet-Based Band Splitting for Improved Systematic Error Correction and Noise Reduction in Kepler Light Curves" Kepler Science Conference, NASA Ames Research Park, Mountain View, CA, December 2011
• "Automated Video Analysis of Animals in their Natural Habitats"
Behavior 2011 - Joint Meeting of the Animal Behavior Society and the International Ethological Conference, Indiana University, Bloomington, July 2011
• "Removing the Noise while Preserving the Signals - A Bayesian Approach to Kepler Light Curve Correction" Kepler Asteroseismic Science Consortium Fourth Workshop, High Altitude Observatory, National Center for Atmospheric Research, Boulder, Colorado, July 2011
• "From Chaperonin Atomic Structure to Folding Activity...via Water Structure" Gordon Research Conference on Protein Folding Dynamics, Ventura, CA, January 2010
• "The Role of Polarity for the Denaturation Power of Urea"
  Jahrestagung der Deutschen Gesellschaft für Biophysik, Berlin, September 2008
• "All-atom Simulations of Protein Unfolding - The Role of Polarity for the Denaturation Power of Urea"
  CBSB08 - From Computational Biology to Structural Biology, Jülich, May 2008
• "The Role of Polarity for the Denaturation Power of Urea"
  Gordon Research Conference on Protein Folding Dynamics, Ventura, January 2008
• "The Role of Polarity for the Denaturation Power of Urea"
  Computer simulation and theory of macromolecules, Hünfeld, April 2007
• "Hindered refolding as mechanism for urea-induced unfolding of the Cold Shock protein"
  367. WE-Heraeus-Seminar: Biomolecular Simulation: From Physical Principles to Biological Function, Bad Honnef, May 2006
• "Hindered refolding as mechanism for urea-induced unfolding of the Cold Shock protein"
  Computer simulation and theory of macromolecules, Hünfeld, May 2006
• "Hindered refolding as mechanism for urea-induced unfolding of the Cold Shock protein"
  EMBO Course: PROTEINS: Structure, Dynamics and Energetics, Shanghai, May 2006
• "Hindered refolding as mechanism for urea-induced unfolding of the Cold Shock protein"
  Berkeley Mini Statistical Mechanics Meeting, Berkeley, CA, January 2006
• "Hindered refolding as mechanism for urea-induced unfolding of the Cold Shock protein"
  Gordon Research Conference on Protein Folding Dynamics, Ventura, CA, January 2006
• "Structural features of beta-amyloid fibrils" (together with E. Luttmann)
  Computer simulation and theory of macromolecules, Hünfeld, April 2005
• "Urea-induced unfolding of the Cold Shock protein"
  Computer simulation and theory of macromolecules, Hünfeld, April 2005
• "Structural and energetical analysis of urea-water solutions"
  Computer simulation and theory of macromolecules, Hünfeld, April 2005
• "Molecular mechanism of urea-induced protein unfolding"
  Biophysical Society 49th Annual Meeting, Long Beach, February 2005
• "Structural analysis of urea-water systems"
  Jahrestagung der deutschen biophysikalischen Gesellschaft, Freiburg, September 2004
• "Molecular mechanisms of protein unfolding"
  Jahrestagung der deutschen biophysikalischen Gesellschaft, Freiburg, September 2004
• "Molecular mechanisms of protein unfolding"
  Computer simulation and theory of macromolecules, Hünfeld, May 2004

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Miscellaneous Media Contributions

Artwork and Illustrations for:

• Essential Genes, 2nd Edition, Dr. Benjamin Lewin, Jones and Bartlett Publishers, 2009
• Protein article by Thomas Huber, Rheinpfalz am Sonntag, Mar 2009
• Pharma Magazine, Cavendish Group, 2008
• Wageningen University Journal, Wageningen, Netherlands, 18 Oct 2007
• Laborjournal, Jul 2007
• Science Museum of Minnesonata, Minnesota, USA, May 2007
• Prion article by Roger Highfield, The Daily Telegraph, London, Great Britain, 30 May 2006
• Prion article in Bild der Wissenschaft, Jan 2006
• (various other scientific and educational magazines, videos, online journals, web portals, and exhibitions)